Title:	Aligners
Author:	Tales Takemiya	Jul 19, 2016
Last Changed by:	Paul Fullerton	Aug 21, 2019
Tiny Link: (useful for email)	https://documentation.partek.com/x/lAJJ
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Flow Documentation (3)     Page: Fusion Gene Detection     Page: Aligning to a reference genome     Page: Count feature barcodes

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Time	Editor
Aug 21, 2019 15:25	Paul Fullerton	View Changes
Aug 21, 2019 15:21	Paul Fullerton	View Changes
Jan 31, 2018 14:58	Tales Takemiya	View Changes
Oct 13, 2016 12:48	Melissa del Rosario	View Changes
Jul 19, 2016 14:51	admin

External Links (11)
    bowtie-bio.sourceforge.net/index.shtml
    https://github.com/iontorrent/TMAP
    https://ts-pgm.epigenetic.ru/ion-docs/Technical-Note---TMAP…
    https://github.com/alexdobin/STAR
    bio-bwa.sourceforge.net/
    https://github.com/Illumina/isaac2
    https://en.wikipedia.org/wiki/Burrows-Wheeler_transform
    https://github.com/DaehwanKimLab/hisat2
    https://ccb.jhu.edu/software/tophat/index.shtml
    research-pub.gene.com/gmap/
    bowtie-bio.sourceforge.net/bowtie2/index.shtml

Flow Documentation (7)     Page: Adding Aligner Indexes Based on an Annotation Model     Page: Aligners     Page: Library File Management     Page: Option Set Management     Page: Fusion Gene Detection     Page: Pre-alignment tools     Page: Adding Reference Aligner Indexes