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We recommend cleaning up projects as well as removing library files that you do not need, then removing the orphaned files. You can also export analyzed projects and save them on an external machine and when you need them again you can easily import them to the server. Please see this information for more details related to: Project management, Removing library files, and Orphaned files. Right click on the data node to delete files from projects that are not needed (e.g, . fastqs from project pipelines that are analyzed).

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Yes, left click to select the data node you want to export. In the bottom of the task menu there will be an option to "Download data". 

How do I add

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reference files if I am not studying human or mouse?

Find the reference genome and annotation files for the species of interest using Ensembl. When adding an assembly, we will need both the reference genome and the transcriptome information files. For more details on adding a reference genome please click here. The annotation file will give us information on gene (transcript) location and we recommend using the .gtf file format; for more information click here. There is no need to unzip or save these files to your local machine, instead right click and copy the link address, then use the url option. We also have a short video here that might help: Library File Management - Partek® Documentation. 

How can I add transgenes to my reference files? 

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