PGS Documentation

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Partek® Pathway® provides a visualization tool for pathway enrichment spreadsheets utilizing the KEGG database. This tutorial will illustrate:

 

Note: the workflow described below is enabled in Partek Genomics Suite version 7.0 software. Please fill out the form at www.partek.com/PartekSupport to request this version or use the Help > Check for Updates command to check whether you have the latest released version. The screenshots shown within this tutorial may vary across platforms and across different versions of Partek Genomics Suite.

 

Description of the Data Set

The pathway enrichment analysis illustrated in this user guide uses a Partek Genomics Suite project available from the Partek website at Partek Pathway user guide project. This data set is also used in the miRNA data analysis tutorial. 

Download and save the zipped project folder in an accessible location on your computer. The project folder for the tutorial will be created in the same location the zipped project folder is stored. 

Importing the Data Set

Import the project using the zipped project importer in Partek Genomics Suite. 

  • Select File from the main toolbar
  • Select Import
  • Select Zipped Project...
  • Choose the zipped project folder, miRNA_tutorial_data

The project will open with three spreadsheets:

1. Affy_miR_BrainHeart_intensities,

2. Affy_HuGeneST_BrainHeart_GeneIntensities,

3. ANOVAResults gene.

 

 

Additional Assistance

If you need additional assistance, please visit our support page to submit a help ticket or find phone numbers for regional support.

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