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Partek Flow Documentation

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Click the green plus () icon next to the Gene sets section header on the library file management page. Alternatively, click the Add library file button and choose Gene set from the Library type drop-down list.

If you are using an assembly supported by Partek (e.g. human), a gene set from will appear in the Add gene set drop-down list (Figure 1). Select the Download gene set radio button and click Create.

Figure 1. For many model organisms, automatic downloads of gene sets are available from the Partek repository (source:

If you prefer to add a custom gene set, or if you are working with a custom assembly, choose Add gene ontology source from the Add gene set drop-down list (Figure 2). Name the gene set by typing into the Custom Name box and click Create. Characters such as $ * | \ : " < > ? / % cannot be used in custom names. A gene set file can be added from the Partek Flow Server or a URL download link. The behavior of each option is similar to when importing a reference sequence (see Adding a Reference Sequence). When browsing for files on the Partek Flow server, only the files with relevant file extensions will be visible (.gmt and various compressed formats).

Figure 2. Adding a custom gene set


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