Includes performance optimizations and fixes for improved speed and usability of Partek^® Flow^® software. To upgrade to this version, please follow the steps outlined in our Installation Guide.

10.0.21.0509

• Added a feature of allowing manually type in a list of features to color in scatterplot
• Added annotate Visium task to add tissue position and image information on 10X Genomics Visium data
• Added compute biomarker as an independent task in addition to the subtask in any classification task
• Improved the Seurat3 integration task
• Enable both Monocle 2 and Monocle 3 in trajectory analysis
• Added download options for mm39 assembly library files
• Minor bug fixes

10.0.21.0411

• Added number of genes for up and down regulation separately in volcano plot
•  Annotate Visium task to add tissue position and image information on 10X Genomics Visium data
• Minor bug fixes

10.0.21.0328

• Added HTSeq quantification method to Microarray data analysis
• Added BWA method on ERCC in pre-alignment QA/QC
• Added project statistics information on homepage
• Improvement Monocle 3 (trajectory analysis) to automatically detect the input data is in log scale or not
• Minor bug fixes

10.0.21.0302

• Upgrade trajectory analysis using monocle 3 algorithm
• Added bubble map shortcut in data viewer
• Added function to specify gene list in filter feature dialog without creating a list beforehand
• Added more options in usage report
• Changed the graph-based clustering nearest neighbor type default from KNN to NN-Descent
• Improvement on interface
• Minor bug fixes

10.0.21.0201

• Added publish cell attributes to project task
• Scatterplot selection labeling is turned off by default
• Minor bug fixes

10.0.21.0117

• Added more options to generate usage report
• Added more configuration options in BWA-MEM
• Added download to the user management table
• Minor bug fixes

10.0.20.1231

• Added heatmap plot type in data viewer, hierarchical cluster report is in data viewer
• Added pie chart on visualizing categorical sample/cell annotation
• Added Harmony algorithm for data transformation
• Added Scran normalization method
• Added Seurat 3 integration task
• Added more options on descriptive statistics task
• Added filtering capability on task management page
• Added ability to perform biological interpretation on miRNA data
• Added similarity matrix task on bulk RNA count matrix data node
• Added correlation section on task menu and move sample correction, correlation analysis under this menu
• Added function to import count matrix to allow import multiple files
• Added function to use sample name to split attribute on single cell data node
• Improved text importer to handle text file generated from R which has the first column shifted
• Improved speed on data viewer
• Improved volcano plot display
• Improved filter feature task dialog speed and added filter based on feature meta data
• Changed the default calculation on features in descriptive statistics dialog
• Changed single cell QA/QC plot to display 4 plots by default
• Changed DESeq2 only normalization report not using per million scale
• Changed the per million normalization using the sum of input count instead of aligned read counts
• Removed the log transformation in tSNE, UMAP and graph-base clustering dialog to reduce confusion
• Minor bug fixes