Import single cell data from count matrix text file(s)

Partek^® Flow^® supports single cell data analysis in count matrix text format. Each matrix text file is assumed to represent on sample, each value in the matrix represents expression value of a feature (e.g. a gene, or a transcript) in a cell. The expression value can be raw count, or normalized count. The requirment of the format of each text file should be the same as count matrix data.

To import a sample during import data, choose Import single cell data option (Figure 1)

Figure 1. Choose import single cell data option

Specify text file location, only one text file (in other words one sample) can be imported at once, preview of the file will be displayed, configuration of the file format is the same as Import count matrix data. In addition, you need to specify Sample information and Gene deduplication method (Figure 2).

Click Finish, the sample will be imported,  on the data tab, number of cells in the sample will  be displayed.

To import multiple samples, repeat the above steps by clicking Import data on the data tab

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