Introduction
The Choose taxonomic level task allows you to generate a count matrix summarizing the number of reads that have been classified by Kraken for each taxon, at a given taxonomic level. The counts give a measure of the relative abundance of each taxon, which can be used for downstream analysis and visualization as if it were RNA-Seq count data.
Running the Choose Taxonomic Level Task
The task can be performed on a Taxonomic data node, which is the output from a Kraken task.
Download a count matrix
Downstream Analysis
Additional Assistance
If you need additional assistance, please visit our support page to submit a help ticket or find phone numbers for regional support.
| Your Rating: |
|
Results: |
|
0 | rates |
Overview
Content Tools