Partek Flow Documentation

Page tree

Versions Compared


  • This line was added.
  • This line was removed.
  • Formatting was changed.


To invoke this task, click an Aligned reads data node and select Combine alignments (Figure 1).  

Numbered figure captions
SubtitleTextCombining alignments

Image Modified

 A list of compatible alignments will appear. The color of the text signifies the layer the alignment corresponds to (Figure 2). Select the alignment you would like to combine and click Finish.

Numbered figure captions
SubtitleTextSelect the alignment you would like to combine with

Image Modified

The resulting Aligned reads data node can now be used for downstream analysis (Figure 3).

Numbered figure captions
SubtitleTextCombined alignments will appear as a new Aligned reads data node

Image Modified

 Note that this task combines the files in the data node within Partek Flow but does not merge the BAM files.  Downloading an aligned reads data node from a Combine alignments task will result to multiple BAM files per sample. 

Additional assistance


Rate Macro