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Given a set of genomic regions, sequence motif can be search based on a string provided by user or alignment matrix from a database like JASPAR. Click on a peak data node, choose Search for known motifs from Motif detection section on the pop-up menu (Figure 1).

Manually: user can manually specify the sequences, click on green plus button to add multiple sequences to search.

From file: use can specify a textt file (.txt) contains a list of sequences, one row per sequence.

The string search tool will retrun return all positions in the set of genomic regions that match the given stringstrings

Detect de novo motifs

Click on Peak data node, select Detect de novo motifs from Motif detection section in the pop-up menu (Figure 1), specify the number of motifs to detect and the length of the motifs.

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