Partek Flow Documentation

Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

To learn more about the biology underlying 

Section Heading

Section headings should use level 2 heading, while the content of the section should use paragraph (which is the default). You can choose the style in the first dropdown in toolbar.

 

 underlying gene expression changes, we can use a gene list to perform pathway or gene ontology (GO) enrichment analysis. 

  • Select the Feature list data node
  • Select Biological interpretation from the task menu
  • Select Enrichment analysis to perform GO enrichment analysis
  • Select GO from the Gene set drop-down menu
  • Select Finish 

An Enrichment task node will be generated.  

  • Double-click the Enrichment task node to open the task report

The Enrichment task report spreadsheet lists GO terms by ascending p-value with the most significant GO term at the top of the list. Also included are the enrichment score, the number of genes from that GO term in the list, and the number of genes from that GO term that are not in the list. 

To view the genes associated with each GO term, select Image Added to open the extra details page.  

For more information about GO enrichment analysis, please see the Gene Ontology Enrichment user guide. 

 

Additional assistance

 

Rate Macro
allowUsersfalse