...

We will use the default options for quantification. To learn more about the different options, please see the Quantify to annotation model (Partek E/M) user guide or mouse over the  next to each option. 

...

• Choose the latest RefSeq Transcripts 8495 annotation from the Gene/feature annotation drop-down menu (you may need to download it first, via Library File Management)
• Click Finish (Figure 2)
  
  

The Quantify to annotation model task node outputs two data nodes, Gene counts and Transcript counts (Figure 3). 

...

To view the results of quantification, we can select either data node output. 

...