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Genomics Suite Documentation

PGS Documentation

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The volcano plot will open in a new tab (Figure 3). Control and color options for the volcano plot are largely similar to those described for Dot Plotfor a dot plot. On volcano plots with many probe(sets)/genes, the shapes and sizes of individual probe(sets)/genes will not be visible until they are selected. 

 

Numbered figure captions
SubtitleTextThe volcano plot shows each probe(set)/gene as a point. The X Axis shows fold change with no change (N/C) as the mid-point. The Y Axis shows p-values in descending value from a maximum of 1 at the X Axis intersection.
AnchorNameVolcano Plot

 

To facilitate analysis, we can add cutoff lines for both fold-change and p-value. 

  • Select () 
  • Select AxesSelect the Axes tab
  • Select Set Cutoff Lines (Figure 4)

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