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The public key and Python libraries are available here:  PartekFlow-REST.zip

Upload and analyze a group of samples.

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>python UploadSamples.py -v --server http://localhost:8080 --user admin --files ~/sample1.fastq.gz ~/sample2.fastq.gz --project ProjectName --pipeline AlignAndQuantify --inputs 28061,145855

Generate an authentication token

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curl --form username=admin --form encrypt=RSA --form password=cUOWY0VvkSFagr... http://localhost:8080/flow/api/v1/users/list

Add a collaborator to a project

curl -X PUT "http://localhost:8080/flow/api/v1/projects?project=ProjectName&collaborator=user1&role=Collaborator&username=admin

&encrypt=RSA&password=[url encoded token]"

Monitor a folder and upload files as they are created

#!/bin/bash

inotifywait -m $PATH_TO_MONITOR -e create -e moved_to |

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              python UploadSamples.py -v --server $SERVER --user $USER --password $TOKEN --files $path/$file --project "$PROJECT" --pipeline $PIPELINE --inputs $INPUTS

      fi

  done

Monitor the queue and send a notification if there are too many waiting tasks

#!/bin/bash

while true; do

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