Genomics Suite Documentation

PGS Documentation

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6. Ratio(shNANOG vs. Primed): ratio of average methylation level in one over the other  other the other contrasted group (shNANOG and Primed, respectively). Ratio is reported in linear space.

7. Fold Change(shNANOG vs. Primed): fold-change in one over the other contrasted group (shNANOG and Primed, respectively). Fold-change is reported in linear space.

8. Fold Change(shNANOG vs. Primed) (Description): if fold-change > 1, it means hypermethylation in the first group (shNANOG), if fold-change < -1, it means hypomethylation in the first group (shNANOG), relative to the second group (Primed).

9. & 10. Lower and upper (respectively) limits of 95% confidence interval of the fold-change

11. Estimate(shNANOG vs. Primed) 

 

Numbered figure captions
SubtitleTextANOVA spreadsheet (truncated). Each row is a result of an ANOVA at a given CpG locus (identified by the Probeset ID columns). The remaining columns contain annotation and statistical output
AnchorNameANOVA Spreadsheet

 

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