Page History
To install or upgrade to the latest version of Partek® Flow® softwarePartek Flow software, follow the directions outlined in the Installation Guide.
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11.0.
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24.
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- Improved feature on generating filtered node operation on differential analysis report page, the page will not redirect automatically after clicking the button
- Changed some import task labels
- Minor bug fixes
10.0.22.0330
- Changed the order of Annotation models section in library file management page, Genomics library files tab
- Removed selecting files from local computer option, instead files need to be transferred to server to be used in tasks
- Improved the speed of UI
- Minor bug fixes
10.0.22.0321
- Bug fix on enrichment report visualization
- Bug fix on Seurat3 integration task excluding feature IDs with hyphen
10.0.22.0313
- Added option to allow features to be sorted based on a feature list in heatmap
- Allow to invoke WNN on SVD data node
- Minor bug fixes
10.0.22.0228
- Improved on handling big genome alignment like wheat
- Added classification summary report on Garnett classify cell type task
- Allow to sort heatmap samples/cells using numeric attributes
- Improved the speed on sctransform task
- Minor bug fixes
10.0.22.0213
- Added TF_IDF normalization task
- Added singular value decomposition task
- Improved the Seurat3 integration computation on normalized with SCTransformed data by adding PrepSCTIntegration function
- Changed the Seurat object importer, added convert Seurat to matrix task
- Removed Shrimp aligner support
- Minor bug fixes
10.0.22.0130
- Improved Flow homepage layout
- Improved the pipeline management page
- Minor bug fixes
10.0.22.0121
- Added sorting observations based numeric attribute function on heatmap
- Added gene labeling option in heatmap when use Ensembl annotation
- Added CellRanger ATAC wrapper
- Improved filter observation tasks to easily choose multiple subgroups from the same attribute
- Improved feature list creation after features selected on data viewer
- Minor bug fixes
10.0.22.0102
- Added GSEA task for biological interpretation
- Extend Cell ranger task to support custom assemblies
- Improved Space ranger interface to be more intuitive
- Upgraded GATK to version 4.2
- Removed standardization option in t-SNE dialog
- Added learning rate parameter in t-SNE advanced dialog
- Added function to allow to specify multiple levels in each comparison panel in non-parametric ANOVA and Welch's ANOVA task
- Minor bug fixes
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0414
- Added CellphoneDB task to analyze cell-cell communication process
- Added display transcripts location ability on 10X Genomics Xenium data visualization
- Improved trim adaptor task to be more memory efficient
- Improved file browser when specify a location and click go button, it will scroll to the location on the left panel
- Moved all tasks in Peak analysis section to Region analysis section
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0414.55
11.0.24.0325
- Added more options for variant filter by fields
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0325.52
11.0.24.0317
- Added hierarchical cluster analysis task to similarity matrix data node
- Added statistical analysis task to cell descriptive stats
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0317.49
11.0.24.0311
- Improved convert Seurat to matrix dialog to allow to configure meta data
- Added more options in filter annotated peaks dialog
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0311.45
11.0.24.0226
- Improved differential analysis report filter option on log2 ratio to allow user to specify a range to filter
- Improved Normalize to housekeeping genes dialog to display both gene ID and gene name
- Added data repository management on Settings page
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0301.39
11.0.24.0204
- Added long reads aligner minimap2 and pbmm2
- Simplified the Data Viewer configuration dialogs
- Added Scree plot and component loadings table to the PCA report by default
- Added Poisson regression and Negative binomial regression as options in the Differential analysis task
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0204.33
11.0.24.0102
- Automatically generate spatial report on analysis tab after spatial data import
- Added alt-splicing task option on Salmon's transcript count data node
- Added STARsolo task for 10x Genomics scRNA-seq data
- Updated FreeBayes to v1.3.6
- PCA task default feature filter method is changed to variance from vst
- Filter peaks task is moved to Filtering section from Peak analysis section on the menu
- Make the enable/disable user account as separate privilege from add user account for admin
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:24.0102.29
11.0.23.1204
- Enabled MACS peak detection report visualizations in the Data viewer
- Improved the algorithm for the normalize to housekeeping genes task
- Added more gene annotation options in SNV task report
- Fixed the Venn diagram issue on some of the browsers
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1204.23
11.0.23.1105
- Added search function in Help menu to directly search the content in documentation page
- Added option to choose a number of features to use in PCA computation
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1105.16
11.0.23.1023
- Improved differential analysis report layout
- Add impute missing value task
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1023.14
11.0.23.1009
- Improved pre-alignment QC report
- Fixed differential analysis report table download issue
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.1009.11
11.0.23.0918
- The user interface now boasts a modern appearance
- Enhanced the import wizard for greater intuitiveness and user-friendliness
- Added support for SomaLogic ADAT bulk protein data
- Improved the file browser for fast access to recent server uploads
- Bolstered file protection to prevent accidental deletions when used by other projects
- Added support for the 10x Genomics Xenium platform
- Introduced support for the Nanostring CosMx platform
- Added a new task for Correlation analysis between different assays
- Improved scatterplot selection with a handy painting mode
- Added the ability to display a high resolution Visium image with a new Spatial imaging report task for quick viewing
- Added a manual alignment option for tissue image visualization
- Streamlined the import process for multiple files per sample, e.g. import all 3 sparse matrix (feature-barcode-matrix) files per sample for all samples at one time
- Added more available information on the Annotated region report
- Improved the Seurat object conversion to be more intuitive
- Added a more detailed report to the Adapter trimming task
- Creating pseudobulk data by pooling single cells has been made easier with increased functionality
- Optimized the differential analysis dialogs for improved usability
- Changed the default normalization method for bulk RNA-Seq data to Median ratio (DESeq2)
- Improved the Detect fusions and Trim bases tasks to be more intuitive
- Allowed the Single-cell QA/QC task to be performed on individual samples
- Minor bug fixes
Latest docker image: registry.partek.com/rtw:23.0918.1
Archived Release Notes -- Partek Flow 10
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