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If you are using an assembly supported by Partek (e.g. human), a gene set from geneontology.org will appear in the Add gene set drop-down list (Figure 1). Select the Download gene set radio button and click Create.
Figure 1. For many model organisms, automatic downloads of gene sets are available from the Partek repository (source: http://geneontology.org/)
Figure 2. Adding a custom gene set
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