Page History
...
A basic example of a spatial data analysis, starting from the Single cell counts node, is outlined below and is similar to a Single cell RNA-Seq analysis pipeline with the addition of the Spatial report task (shown) or Annotate Visium image task (not shown).
Note that Single cell QA/QC has not been performed in this example to visualize all spots (points) on the tissue image but would be performed from the Single cell counts node with the filtered cells applied to the Single cell counts before the Filter features task. Click here for more information on Single cell QA/QC (see the pipeline in Figure 11).
Performing tasks in the Analyses tab
...
Overview
Content Tools