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 A

During the conversion, the BAM files are converted to FASTQ files and a new data node will be generated containing FASTQ files (Figure 2) . Note that the files generated are compressed and the filenames are *.fq.gz. 

During the conversion, the BAM files are converted to FASTQ files.  The name The filenames of the BAM FASTQ files will be based on the sample names in the Data tab. If the BAM file contains The files generated are compressed with the extension *.fq.gz. For samples containing BAM files with paired end reads, two FASTQ files will be generated for each BAM, and the files names will contain be appended with _1 and _2. An example  in in Figure 3 shows 18 FQ .GZ files fq.gz output files that came from 9 BAM files.

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