Page History
...
- Select the Trimmed reads data node
- Select Aligners from the task menu to display available aligners (Figure 1)
| Numbered figure captions | ||||
|---|---|---|---|---|
| ||||
|
Partek Flow offers a variety of different aligners. Mouse over any option for a short description. For this tutorial, we will use STAR, a fast and accurate aligner commonly used for RNA-Seq data. For more information about STAR and the other aligners, please consult the Aligners user guide.
...
- Select Homo sapiens (human) - hg19_chr22 from the Assembly drop-down menu
- Select Whole genome from the Aligner index drop-down menumenu
- Select Finish (Figure 2)
| Numbered figure captions | ||||
|---|---|---|---|---|
| ||||
|
Alignment is a resource-intensive task and may take a while to complete, even mapping only to chromosome 22. Nodes that have been queued, but not completed are shown in a ligher color than completed tasks (Figure 3).
| Numbered figure captions | ||||
|---|---|---|---|---|
| ||||
|
- Mouse over the Align reads task node to view the estimated end time and progress percentage (Figure )
...
- 4)
| Numbered figure captions | ||||
|---|---|---|---|---|
| ||||
|
...
Overview
Content Tools