PGS Documentation

Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

The Genome Viewer will open. The default tracks are the transcript tracks, the sequence visualization tracks, and the cytoband track (Figure 1). 

 

Numbered figure captions
SubtitleTextViewing ChIP-Seq data in the Genome Viewer
AnchorNameGenome Viewer tab with ChIP-Seq data

Image Added

  • Select New Track from the left-hand side of the Tracks tab
  • Select Add tracks from a list of spreadsheets 
  • Select Next > 
  • Select p-value_filtered.txt and Motifs_instances.txt tracks 
  • De-select Aligned Reads 
  • Select Create

This will display the enriched regions found in the samples and the locations of the motif instances from the de novo motif discovery (Figure 3). The two track display the detected regions at each location on the chromosome for the NRSF-enriched sample, chip, and aligned them to the de novo discovered motif binding sites. 

 

Additional assistance

 

Rate Macro
allowUsersfalse