Save the script in ~/.partekflow/user_tasks/copy.sh
for variants in "$@"
do
cp $variants /mnt/nfs/Backup
done
To add this task go to Settings > Task management
Click Add task
Click Create new task
Specify the task name and version
Choose the copy.sh file for the Executable option
This task runs on All samples
Choose Variants for the Input data type and Last option for Input from
This task doesn't produce any outputs that will be managed by Flow
Nor does it require any options
Click Finish
After selecting a variants node on the Analyses tab the task can be invoked from the Custom tasks section
The script will execute and the task will appear
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