Obtain and add files to the project

Follow along to add files to your Xenium project: Add files to the project. 

Perform quality control and filtering

• Filter the data including control probes using the Filter features task 

Include the Gene Expression features. 

• This results in a Filter features task (rectangle) and node (circle) results. Right click the circle to Rename data node to "Filtered to only gene expression". 

• Click the "Filtered to only gene expression" and select the Single cell QA/QC task from the context sensitive menu on the right. 

• When the task completes it will be opaque and no longer transparent with a progress bar. 

This task does not produce a circular results node but instead a rectangle. Double click the task to open and filter cells as described here.

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