How to create a project

When create a project, you first need to transfer the data files to the Flow server, and then import the files into your project using the import data wizard, here is the video

Why do I get "?" for FDR p-values in my Deseq2 result

When a feature (gene) has low expression, it will be filtered by automatic independent filtering. To avoid this, you can either perform filter feature to exclude low expression features before Deseq2, or in Deseq2 advanced option configuration, change Appy independent filtering setting to No. Details about independent filtering can be found at Deseq2 documentation