How to import a study from GEO / ENA
If a project is publicly available in the Gene Expression Omnibus (GEO) and European Nucleotide Archive (ENA) databases, you can import associated FASTQ files, sample attributes, and project details automatically into Partek Flow.
- On the Homepage click New Project to create a project and give the project a name
- Click Add data
- Select fastq as the file type after choosing between Single cell or Bulk as the assay types
- Click Next
- Choose GEO / ENA
- Enter the BioProject ID of the data set you would like to download. The format of a BioProject ID is PRJNA followed by one to six numbers (e.g. PRJNA291540)
A GEO ID can also be used in the format GSE followed by one to five numbers (e.g. GSE71578).
- Click Finish
Imported projects from GEO / ENA
The data tab will be populated with sample information. Sample names will be GSM IDs for each sample. Attributes and attribute levels are drawn from the GEO sample characteristics information.
GEO import populates the data tab.
Common Issues
FAQ
Additional Assistance
If you need additional assistance, please visit our support page to submit a help ticket or find phone numbers for regional support.
| Your Rating: |
|
Results: |
|
0 | rates |
Overview
Content Tools