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How do I classify the cells?

Classification in Partek Flow can be performed manually or with automatic cell classification which is explained in more detail here: Classification - Partek® Documentation. Automatic classification needs to be performed on a non-normalized single cell data node; once complete, publish cell attributes to project then use this classification to configure the umap, pca, t-sne, and others. You may choose to perform Graph-based clustering and K-means clustering to help identify biomarkers that can then be used to identify the clusters by manual classification. We also provide hosted lists for different cell types. 

Statistics FAQs

Why do I get "?" for FDR p-values in my Deseq2 result?

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