Partek Flow Documentation

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SubtitleTextViewing additional information about the Quality score trimming method
AnchorNameConfiguring Trim bases

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The Trim bases task will generate a new data node, Trimmed reads (Figure 3). We can view the task report for Trim bases by double-clicking either the Trim bases task node or the Trimmed reads data node or choosing Task report from the task menu. 

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SubtitleTextResults of the Trim bases task
AnchorNameTrim bases report

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The results are fairly consistent across samples with ~50% of reads untrimmed, ~45% trimmed, and ~5% removed for each. The average quality score for each sample is increased with higher average quality scores at the 3' ends. 

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