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• Select fastq as the file type after choosing between Single cell or Bulk as the assay types

• Click Next
• Choose GEO / ENA 
• Enter the BioProject ID of the data set you would like to download. The format of a BioProject ID is PRJNA followed by one to six numbers (e.g. PRJNA291540)

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Imported projects from GEO / ENA

The data tab will be populated with sample information. Sample names will be GSM IDs for each sample. Attributes and attribute levels are drawn from the GEO sample characteristics information. 

GEO import populates the data tab. 

Common Issues

FAQ

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