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Select all 3 files for importing into Partek Flow and click NextFlow 

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Specify the annotation file used when running the pipeline. If desired, the sample name can also be modified.   

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Click Finish when you have completed configuration. This will queue the import task.

Importing matrices in h5 format (this Hierarchical Data Format is recommended and ideal for multiple samples)

The Cell Ranger pipeline can also generate the same filtered gene barcode matrix in h5 format. This gives you the ability to select just one file per matrix and select multiple matrices to import in batch. To import an h5 matrix, simply select the h5 file when selecting a file for import and click Next. This will take you to the same configuration page select the  Image Added Import scRNA full count matrix or h5 option.  Browse for the files  and modify any configuration options as shown in Figure 5. 

This feature is also useful for importing multiple samples in batch. Simply put all h5 files from your experiment on a single folder, navigate to the folder and select all the matrices you would like to import.

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