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Importing matrices into Partek Flow (this Market Exchange Format is popular for public repositories) 

To import the matrices into Partek Flow, create a new project and click Import  > Import scRNA count feature-barcode-mtx.

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Click Finish when you have completed configuration. This will queue the import task.

Importing matrices in h5 format (this Hierarchical Data Format is ideal for multiple samples)

The Cell Ranger pipeline can also generate the same filtered gene barcode matrix in h5 format. This gives you the ability to select just one file per matrix and select multiple matrices to import in batch. To import an h5 matrix, simply select the h5 file when selecting a file for import and click Next. This will take you to the same configuration page shown in Figure 5.

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