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Importing matrices in h5 format (ideal for multiple samples)

Watch the video: Importing Single Cell h5 Files

The Cell Ranger pipeline can also generate the same filtered gene barcode matrix in h5 format. This gives you the ability to select just one file per matrix and select multiple matrices to import in batch. To import an h5 matrix, simply select the h5 file when selecting a file for import and click Next. This will take you to the same configuration page shown in Figure 4.

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