The library file management tool in Partek^® Flow^® provides an easy way to create, process and manage reference sequences, cytoband files, annotation models, aligner indexes, gene sets, variant databases and microarray probe sequence files.   

This user guide will cover the following topics:

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For quick start, you can jump ahead and watch the video of the last section.

Library File Management settings

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SubtitleText Adding a custom probe tab file e.g. for a custom microarray chip AnchorName add-custom-probe-seq

A custom probe tab file can be added from the Partek Flow Server, My Computer or a URL download link. The behavior of each option is similar to when importing a reference sequence (see Adding a reference sequence). When browsing for files on the Partek Flow server, only the files with relevant file extensions will be visible (.probe_tab and various compressed formats). Please see the Importing Custom CEL files user guide for more information.

Quick Video Demo of Library File Management

The short clip below (video only, no audio) shows how to quickly setup some library files for the hg19 human reference genome assembly. The process can be adapted to the different kinds of file types.

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References

1. Cingolani P. et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly. 6(2):80-92. PMID: 22728672

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