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All library file tasks are logged in the System queue, which can be accessed by clicking on the avatar in the top right corner, choosing Settings and clicking System queue on the left. When a library file is being created, the hourglass icon ( Image Modified ) will appear in the Actions column (Figure 4, above). Clicking this icon will display information on the task progress (Figure 17).

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Adding a Reference Sequence

Click the green plus ( Image Modified ) icon next to the Reference Files section header (Figure 14, above) and choose Reference sequence from the Library type drop-down list in the Add reference sequence dialog (Figure 18). Alternatively, click the Add library file button and choose Reference sequence from the Library type drop-down list (Figure 16, above). If a cytoband file is already associated with an assembly, Reference sequence will be the only option available in the Add reference sequence dialog and will not appear in a drop-down list (Figure 18).

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Adding a Cytoband

Click the green plus ( Image Modified ) icon next to the Reference Files section header (Figure 14, above) and choose Cytoband from the Library type drop-down list in the Add reference sequence dialog (Figure 24). Alternatively, click the Add library file button and choose Cytoband from the Library type drop-down list (Figure 16, above). If a reference sequence is already associated with an assembly, Cytoband will be the only option available in the Add genome dialog and will not appear in a drop-down list (Figure 24).

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