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Click on the Configure link in the Advanced options section to open the Advanced options dialog (Figure 5). Use R1 length to hard trim the R1 reads to specified length; use R2 length to hard trim the R2 reads to specified length. Use the Memory limt limit option to cap the RAM usage (in GB).

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SubtitleTextAdvanced options of Space Ranger
AnchorNameadvanced_space_ranger_options


Space Ranger task report


The result of Space Ranger task is the Single cell counts data node. Double click the Single cell counts node to invoke the report the task report (Figure 7) which is the same as the ‘Summary HTML’ from Space Ranger output. Task report is sample based. You can use the dropdown list in top left to switch samples (not shown in Figure 6).  Each report consists of two pages: Summary and Analysis. For deatails, please visit 10x Genomics web page.

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SubtitleTextSpace Ranger report. The report matches the Summary HTML from the Space Ranger pipeline by 10x Genomics. Each sample is shown as a separate page, with two tabs - Summary and Analysis. If a project contains more than one sample, sample selector will be displayed in top left
AnchorNamespace_ranger_HTML_report

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