Post-alignment QA/QC output table for single-end sequencing
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result-table
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Numbered figure captions
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Post-alignment QA/QC output table for paired-end sequencing
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result-table-paired
In addition to the summary table, several graphs are plotted to give a comparison across multiple samples in the project. Those graphs are Alignment breakdown, Coverage, Average base quality per position, Average base quality score per read, and Average alignments per read. Two of those (Average base quality plots) have already been described.