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| SubtitleText | Partek Flow Home page |
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| AnchorName | Partek Flow Home page |
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Starting a new project
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| SubtitleText | Uploading data into Partek Flow |
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| AnchorName | Data upload |
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Because genomics datasets are generally large, it is ideal to have the data copied in a folder directly accessible to the Partek Flow server. Make sure that the directory has the appropriate permissions for Partek Flow to read and write files in that folder. You may wish to seek assistance from your system administrator in uploading your data directly.
Select the files you would like to create samples from. Once they've been created, assign the corresponding sample attributes for each sample. The most efficient way to assign sample attributes is by clicking Assign sample attributes from a file and uploading a tab delimited text file. The file should contain a table with the following:
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| SubtitleText | The Analyses tab showing a data node of unaligned reads |
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| AnchorName | Unaligned data node |
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Data and task nodes
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| SubtitleText | Example of a data analysis pipeline |
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| AnchorName | Analysis pipeline |
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Performing tasks
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| SubtitleText | Context sensitive menu for unaligned reads data node |
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| AnchorName | Context sensitive menu |
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Select the task you wish to perform from the menu. When configuring task options, hover over the tab to obtain additional information regarding each option (Figure 6). Click Finish to perform the task.
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| SubtitleText | Obtaining additional information about a task option |
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| AnchorName | Task option information |
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Depending on the task, a new data node may automatically be created and connected to the original data node. This contains the data resulting from the task. Tasks that do not produce new data types, such as Pre-alignment QA/QC, will not produce an additional data node.
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| SubtitleText | Saving visualizations |
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| AnchorName | Saving visualizations |
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Downloading your data
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| SubtitleText | Downloading data |
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| AnchorName | Downloading data |
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Partek Flow in action
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