Partek Flow Documentation

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SubtitleTextList selector window
AnchorNameList_selector

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The List name field can be filled out with specific information about the selected list. This will also serve as the set's name on the Venn diagram. Hovering your mouse over a specific feature list highlights its node location on the task graph. 

 

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SubtitleTextSelecting feature list highlights data node
AnchorNameSelect_feature_list_1

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Conversely, clicking a feature list data node highlights the feature list on the right panel.

 

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SubtitleTextSelecting the data node
AnchorNameSelecting_feature_list 2

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Click on theicon to select the identifier that will be used to compare between the sets. The Select identifier dialog box will then appear.


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SubtitleTextThe Select identifier dialog box
AnchorNameSelect_identifier

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For your convenience, example entries for each possible identifier is displayed. Select the radio button of the identifier you would like to use for comparison. Note that the List generator only uses Identifiers to determine common features within a list. For feature lists generated by automated tasks like Cufflinks' novel transcript discovery function, keep in mind that these identifiers may not be referring to the same feature. 

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SubtitleTextVenn diagram window
AnchorNameVenn_diagram

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To save the current diagram displayed, click the Save image button. Images can be either in SVG or PNG format. You can also define the size and resolution you want the diagram to be. To maintain the fidelity of the colors in the Venn Diagram, we recommend downloading the image in PNG format. If a vector-based file format is required, you can also export the diagram in SVG format.

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SubtitleTextHighlighted Venn diagram
AnchorNameHighlighted_Venn

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To download a list of identifiers belonging to a section, click on the section (a striped pattern will appear) and click the Download list button. Multiple sections can be selected to download a merged list of all corresponding identifiers. The Total features selected display updates the number of features selected as you select more sections.

 

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SubtitleTextDownloading list of sections selected within a Venn diagram
AnchorNameDownload_Venn_sections

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To change the lists displayed, click the Select lists button. This will bring up the List selector again.

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