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| SubtitleText | Online repository of user guides, tutorials, and whitepapers |
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| AnchorName | documentation.partek.com |
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Sample Data Sets
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| SubtitleText | Downloading sample data sets |
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| AnchorName | tutorial-data |
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Depending on your preference, choose one of the sets. A new project will be automatically created (iDEA Challenge or Brain vs UHR) and Partek Flow will take you to a Data tab of that project (Figure 3). Since this is a tutorial project, there is no need to click on Import data as it will be done automatically.
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| SubtitleText | Creating a new project based on a sample data set. The project will be populated with samples automatically |
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| AnchorName | new-project |
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At first the project is empty, but the file download will start automatically in the background. You can wait a few minutes and refresh the page or you can monitor the download progress in the Queue (Figure 4). You can access the Queue from the menu at the top of the page. ...
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| SubtitleText | Downloading tutorial data task in the queue (note that any user can download sample data set) |
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| AnchorName | tutorial-download-task |
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iDEA Challenge project is based on RNA-seq experiment performed using Illumina paired-end reads. The samples are eight commonly used breast cancer cell lines; therefore, the sample set consists of 16 fastq files (total size of 790 MB). For downstream steps you may want to divide the samples into two groups, based on expression of estrogen receptor (ER). ER-positive cell lines are: BT474, MCF7, T47D, and ZR751; the remaining cell lines are ER-negative.
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| SubtitleText | Hover over a task in the toolbox to get a balloon with a short description |
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| AnchorName | toolbox-tooltip |
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| SubtitleText | Hover over a tooltip icon to get a balloon with a short description |
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| AnchorName | i-icon-tooltip |
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Reporting a Problem
In an unlikely case of an error occurring during the analysis, the failed task will be highlighted by an exclamation mark (Figure 7).
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| SubtitleText | Failed task (in this example: Filter variants) highlighted by an exclamation mark. Note the the downstream task, i.e. Variants data node, is depicted as translucent to indicate that no result was produced |
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| AnchorName | failed-task |
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The task node’s Task details page will contain Warning information section (optional) and the Error message section (Figure 8). In addition, you can download log files to your local computer (Download logs) or directly send them to Partek’s technical support team (Send logs to Partek), who will get back to you shortly.
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| SubtitleText | Task details page of a failed task. Warning information section is optional, the content of the Error message section depends on the type of error. Send logs to Partek sends the log files to Partek’s technical support team |
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| AnchorName | task-details-error |
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Contacting Support
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