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1. Add the public key for the Partek package repository*
   $ sudo apt-key adv --keyserver keys.gnupg.net --recv-keys C82B61BF
   
   
2. Add the Partek package list to your repository*
   $ sudo wget -P /etc/apt/sources.list.d/{+}http://packages.partek.com/debian/partek-flow.list+http://packages.partek.com/debian/partek-flow.list
   *Steps 1 and 2 only need to be performed once prior to the first installation. Re-installation and updates do not require this step.
   
   
3. Update the list of available packages
   $ sudo apt-get update
   
   

4. Install Partek Flow
   $ sudo apt-get install partekflow
   When asked to continue, type the letter Y and press Enter.
   During the installation, you will be prompted for the Flow server port (Figure 1). Unless necessary, accept the default HTTP port: 8080 by pressing Enter.
   

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   Figure 1:

   
   

   Numbered figure captions
   SubtitleText Configuring HTTP port for Partek Flow during installation AnchorName HTTP Port Configuration
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5. If additional configuration is needed, use the reconfigure command below. This can be run any time after Partek Flow is installed. For details regarding each setting, contact the Partek Licensing Department. In most cases, this step can be skipped.
   $ sudo dpkg-reconfigure partekflow
   
   
6. (Optional) To manually configure Partek Flow or to set additional advanced options or environment variables, edit the following configuration file:
   /etc/partekflow.conf
   Note that all changes made by the reconfigure command in step 5 are also stored in this configuration file.
   
   
7. Start the Partek Flow server
   $ sudo service partekflowd start
   A message should indicate that Partek Flow is now running:Starting Partek Flow server: OK
   Step 7 needs to be performed only once after installation. Partek Flow will start automatically whenever the server restarts.

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• For users with Node locked licenses, copy and paste the license key received from Partek Licensing Support in the License key box. If you have not received the license.dat file, contact your Account Manager or email licensing@partek.com.
• For users with Floating licenses, make sure that the FlexLM software is running (see section on Setting up the License Manager ). In the License key box, enter:
  SERVER license-server-hostname (Change to your license server name or ip)
  USE_SERVER
  
  

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Figure 2:  

Numbered figure captions
SubtitleText Setting up the Partek Flow license during installation AnchorName License Key
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Setup the Administrator account

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To set up the Partek Flow administrator account. Specify the username ('admin'), password, and email (Figure 3) and click Next. Image Removed
Figure 3:

Download Genome Library Files

Partek-distributed library files and aligner indices can be pre-downloaded, to save time in the future (Figure 4). Unnecessary genome builds may be skipped by clicking the button before clicking Next.
All Partek Flow users share library files and the size of the library folder can grow significantly. At least 100GB of free space should be allocated for library files. For more information on library file management setup, see our Library file management user guide.

Figure 4: Downloading Partek-distributed library files during installation

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