...

Upon creation of a new project, the Analyses tab will appear, prompting you to add samples to your project. Click the blue Add data button Image Added(Figure 2).

Select the type of data (Single cell, Bulk, Other), choose the assay type, and select the data format. Partek Flow accepts various data types. Use the Next button to proceed with import. 

...

Clicking a data node brings up a context sensitive menu on the right (Figure 5). This menu changes depending on the type of data node. It will only present tasks which can be performed on that specific data type. Hover over the task to obtain additional information regarding each option. 

Select the task you wish to perform from the menu. When configuring task options, hover over the Image Removed tab to obtain additional information regarding each option is available (Figure 6). When available, hover over Image AddedTooltips or click theImage Addedvideo help for decision making. Click Finish to perform the task.

...

Depending on the task, a new data node may automatically be created and connected to the original data node. This contains the data resulting from the task. Tasks that do not produce new data types, such as Pre-alignment QA/QC, will not produce an additional data node.

To view the results of a task, click the task node and choose the Task report option on the menu.

Saving visualizations

Click the Click Save button  Image Added on any visualization to export a publication-quality image (Figure 7).

...

Downloading your data

Data associated with any data node can be downloaded by clicking the node and choosing Download data at the bottom of the task menu (Figure 8). Compressed files will be downloaded to the local computer where the user is accessing the Partek Flow server. Note that bigger files (such as unaligned reads) would take longer to download. For guidance, a file size estimate is provided for each data node. Downloaded files can be seamlessly imported in Partek^® Genomics Suite^®.

...

Partek Flow in action

...