Generate group cell counts

In If a single cell count data node , if it contains clustering analysis resultscontains cell attribute information, e.g output data node from clustering analysis or manually classified groups at cell level, number of cell counts in each classified ., clustering results, classifications, or imported attributes, a counts-type data node containing the number of cells from each attribute group for each sample can be generated , this matrix can also be and used for downstream analysis. 

Click on To invoke Generate group cell counts: 

• Click a single cell count data node

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• with cell-level

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• attribute information
• Click Pre-analysis tools in the toolbox
• Click Generate group cell counts

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• Select the attribute to group the cells from the Group by drop-down menu (Figure 1)

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• Click Finish

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A group cell counts node will be generated, it . The data node contains a matrix of cell count counts in each sample for each group. You can view the counts results in the Group cell counts report (Figure 2).

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