If a single cell data node contains cell attribute information, e.g., clustering results, classifications, or imported attributes, a counts-type data node containing the number of cells from each attribute group for each sample can be generated and used for downstream analysis.
To invoke Generate group cell counts:
- Click a single cell count data node with cell-level attribute information
- Click Pre-analysis tools in the toolbox
- Click Generate group cell counts
- Select the attribute to group the cells from the Group by drop-down menu (Figure 1)
- Click Finish
The Cell counts data node is a counts type data node and downstream analysis tasks, such as normalization, PCA, and ANOVA, can be used to analyze the group cell counts data.
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