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Let h be the maximum of L_A. The quality score of a sequence is calculated as Q_A(S) =L_A(S)/h.  A quality score of 1 corresponds to a sequence with the most likely base at each position of the alignment matrix. The user will specify a threshold Q_A.  all sequences that have a score T_A>Q_A *h will be reported.

Task report

The Search for known motifs task report contains summary and detail tabs:

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The Gibbs sampler is run on a range of the motif sizes specified by the user. The motif with the greatest average LLR (LLR /length) is returned. To find N motifs in a set of regions, the Gibbs sampling method is run N times. The motif instances found from the previous run of the Gibbs sampler are removed before performing the next run.

Task report

The task report includes summary and detail tabs. 

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