Partek Flow Documentation

Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

The Classified groups task report opens a t-SNE like the one used to classify the cells, but the newly calculated classifications biomarker table is available below the plot (Figure 28). 

 

Numbered figure captions
SubtitleTextClassify cells task report
AnchorNameClassify cells task report

To view the cell counts table, open the task report for the Group cell counts data node.

...

The number of cells for each sample is listed (Figure 29). This data node can be used as the starting point for differential cell count analysis in multi-sample experiments where the number of cells of a particular cell type if two or more conditions is of interest. 

 

Numbered figure captions
SubtitleTextGroup cell counts
AnchorNameGroup cell counts report

Image Modified

Comparing gene expression between cell types

...