Flow Documentation

Partek Flow Documentation

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  • Double-click the t-SNE task node to open the t-SNE task report (Figure 11)

Numbered figure captions
SubtitleTextt-SNE plot
AnchorNamet-SNE plot

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The t-SNE scatter plot is interactive and can be viewed for 2D or 3D (calculated separately). Using the t-SNE plot, cells can be classified based on clustering results or differences in gene and pathway expression. By default, the t-SNE plot will be colored by the clusters identified by Graph-based clustering if available. 

The t-SNE plot is in 3D by default. You can rotate the 3D plot by left-clicking and dragging your mouse. You can zoom in and out using your mouse wheel. You can pan by right-clicking and dragging your mouse. The 2D t-SNE is also calculated and you can switch between the 2D and 3D plots using the Plot style radio buttons. 

By default, the t-SNE plot will be colored by the clusters identified by Graph-based clustering. 

 

 

 

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