Partek Flow Documentation

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  • Activate the 3D lasso tool by selecting 
  • Draw the lasso around the cluster of red cells and click the circle to close the lasso (Figure 27)

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SubtitleTextClassifying oligodendrocytes (red)
AnchorNameClassifying MOBP + cells

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  • Select Save classifications

These red cells are MOBP positive, indicating that they are the oligodendrocytes from every sample. 

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  • Switch modes by selecting 
  • Deselect by clicking on any black space on the plot

Red Green CD14 positive cells are the microglia/macrophages from every sample. 

  • Activate the 3D lasso tool by selecting 
  • Draw the lasso around the cluster of green cells and click the circle to close the lasso (Figure 28)

Numbered figure captions
SubtitleTextClassifying microglia/macrophages (green)
AnchorNameClassifying microglia

Image Added

  • Select Save classifications
  • Name the classification Microglia
  • Select Save
  • Switch modes by selecting 
  • Deselect by clicking on any black space on the plot

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  • Activate the 3D lasso tool by selecting 
  • Draw the lasso around the grey cells and click the circle to close the lasso (Figure 29)

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SubtitleTextClassifying malignant cells (grey)
AnchorNameClassifying malignant cells

Image Added

  • Select Save classifications 
  • Name the classification Malignant
  • Select Save

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The pipeline view will open and the Classify cells tasks will run, generating a new green-layer Classified groups data node (Figure 2730). 

 

Numbered figure captions
SubtitleTextClassify cells tasks from multi-sample t-SNE plot
AnchorNameClassify cells task

 

 


 

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