Genomics Suite Documentation

PGS Documentation

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To install or upgrade to the latest version of Partek® Genomics Suite™ software, follow the directions outlined in the Installation Guide.

PGS7.17.1018

General Improvement:

  • Partek spreadsheet can only be saved as binary format
  • Partek spreadsheet can be exported as text format
  • Import text file will not change the input text file, the imported file will be saved as user defined name in binary format
  • When there are unsaved spreadsheets, save project will give warning message to save each unsaved spreadsheet
  • When clone a spreadsheet, the newly generated spreadsheet name is unique by default
  • Re-ordered the File menu to improve the readability
  • Add a function to impute missing value with random number from a defined distribution
  • Improved the save image dialog on Mac and Linux
  • When open violin plot, display the properties tab by default 
  • When import Affymetrix .cel files on gene expression arrays, the output spreadsheet from File>Import menu is the same as that of gene expression workflow .cel file import

Bug fixes:

  • Fixed a bug on split column dialog on Mac platform
  • Fixed a bug on Affymetrix .arr file import
  • Other minor bug fixes

PGS7.17.0918

General Improvement:

  • Most of the computations are multi-threaded, which drastically increases the speed
  • Viewers generated from spreadsheets are new tabs within the same window frame by default; viewer windows can be docked back to the main window frame
  • Workflow panel is visible in any invoked viewers, order of the workflow steps is more intuitive
  • Updated with modern icons and graphics color palette
  • Mixed model ANOVA uses REML by default
  • Sample ID factor is not included in the model of Alt-splicing ANOVA, GO ANOVA, pathway ANOVA
  • Apply button are removed from most of the dialogs
  • Improved interface is cleaner and more user friendly
  • New functional normalization method in the Illumina methylation array importer (450K and 850K)
  • Improved SWAN normalization in the Illumina methylation array importer
  • Allows import of different versions of the Illumina methylation arrays when using the same set of library files
  • Improved text file importer by adding wizard for specifying the properties of the spreadsheet
  • Removed repeated measures menu option, it is recommended to use ANOVA doing repeated measures analysis
  • Simplified menus and dialogs, removed obsolete functions, improved wording
  • Automatically downloads annotation files, even from sites with HTTPS or redirects (e.g. Affymetrix and GEO)
  • Logged data is detected and appropriate defaults are automatically set

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