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exclude | Additional Assistance |
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We can use Attributes are used to describe your samples. Examples of sample attributes include treatment group, age, sex, and time point. Attributes can be added manually or using a tab-delimited text file to add sample attributes. The text file should have with samples on rows and attributes on columns with where the first column containing contains the sample IDs. In this tutorial, we will add one attribute, Treatment, manually.
- Select the Data tab
- Select Assign sample attributes from a file Manage attributes (Figure 1)
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SubtitleText | Adding sample attributes from a filemanually |
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AnchorName | Sample attribute addition |
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- Select Add new attribute (Figure 2)
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SubtitleText | Select .txt file with sample attributesAdding a new attribute |
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AnchorName | Selecting text attributes file |
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- Select Next
- Select the Import checkbox for Treatment Set Treatment as Name
- Select Categorical as Attribute type
- Select Project-specific for Visibility
- Select Add (Figure 3)
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SubtitleText | Selecting the Treatment attribute for import |
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AnchorName | Selecting attributes to import |
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Configuring a new attribute | AnchorName | Configuring attribute |
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- Name the first New category 0uM
- Select Add
- Name the second New category 5uM
- Select Add
- Name the third New category 10uM
- Select Add
- Select Close to finish creating the attribute (Figure 4)
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SubtitleText | Creating attribute categories |
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AnchorName | Creating attribute categories |
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- Select Back to sample management table
The data table now includes an Attribute column for Treatment (Figure 5). Next, we need to assign samples attribute categories for Treatment.
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SubtitleText | Data table updated with column for Treatment |
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AnchorName | Updated data table |
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The option to edit the Treatment field for each sample will appear as a drop-down menu (Figure 6).
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SubtitleText | Sample attributes appear as a new column in the data table |
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AnchorName | Added sample attributes |
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- Select the Treatment text box for a sample to bring up a drop-down menu with the Treatment attribute categories (0uM, 5uM, 10uM)
- Use the drop-down menus to add a treatment group for each sample
The first three samples (SRR592573-5) should be 0uM, the next three samples (SRR592576-8) should be 5uM, and the final three samples (SRR592579-81) should be 10uM (Figure 7).
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SubtitleText | Add Treatment attribute categories to each sample as shown |
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AnchorName | Configured treatment groups |
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The data table will now show each a Treatment attribute for each sample.