Genomics Suite Documentation

PGS Documentation

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  • Choose Analysis > Reports... from the main menu
  • Select Custom Report and choose Partek Report Plug-in from the drop-down list
  • Specify AnnotationName, remove the <>do NOT include <> in the name, you can use the chip namesame name as the .bgx file you imported the ddata with, or a unique name to your dataset
  • Choose Type by clicking on the cell, default is can be gene level
  • Leave all the others as default value (Figure 2)
  • Specify the report file name and click OK

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  • , we recoommend to put the exported files in their own folder, which allows you to move thefolder instead of all the files individually.
  • Click OK


Numbered figure captions
SubtitleTextConfiguring the GenomeStudio gene expression report dialog
AnchorNamegxdialog

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There are 5 files exported, including a porject file (.ppj), which can be opened directory in Partek Genomic Suite. The project file opens the singal intensities data in a spreadsheet ans associatte the annotation information to the intensity spreadsheet. All intensities are log2 transformed. If there are negative values in the AVG_Signal, The data will be shifted to  the lowest value is 1 and then log2 transformed.

Open project in  Partek Genomics Suite

To open the report, launch Partek Genomics Suite, choose File > Open Project, browse to the .ppj file to open. In the Gene expression workflow, you can proceed add sample attribute step.

Additional assistance

 

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