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• Select Close 

You may see the The Sort bam files dialog . If so, select OK. The will open. Sorting is necessary for all imported .bam files, but you can choose to hide this hint in the future by selecting Please don't show me this hint again.

• Select OK

The imported spreadsheet will open after import completes (Figure 5). In this spreadsheet, samples are rows while the .bam files are sorted. Progress in sorting will be displayed on the progress bar in the lower left-hand corner of the Partek Genomics Suite window. Once sorting has completed, there will be samples on rows with the sample names in column 1. Sample ID and the number of aligned reads is listed in column 2reads mapped to the reference genome for each sample in column 2. Number of Alignmentsallignments (Figure 5). 

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