PGS Documentation

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maxLevel2
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excludeAdditional Assistance

The next step of interpretation is creation of To perform gene set and pathway analysis, we need to create a list of genes overlapping that overlap with the differentially methylated CpG loci. 

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  • Select Create a new spreadsheet with genes that overlap with the regions in the Find Overlapping Genes dialog
  • Select OK
  • Select an annotation - this tutorial uses RefSeq Transcripts - 2014-01-03 
  • You can select a name for the new list, we have named it gene-list (gene-list)
  • Select OK 

A new spreadsheet will be created as a child spreadsheet (Figure 2)

Numbered figure captions
SubtitleTextAnnotating the differentially methylated CpG loci with genes
AnchorNameOverlapping Genes List

Partek Genomics Suite offers several tools to help interpret this list of genes. First, let's look at Gene Set Analysis. 

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